| 1 | Title |
| 2 | Prologue ~ Theme of SUPER METROID |
| 3 | Menu ~ In the Cockpit |
| 4 | Ship Landing |
| 5 | Samus Appearance Jingle |
| 6 | Surface, Sector 1 ~ Surface of SR388 (Ambient) |
| 7 | Item Room / Elevator |
| 8 | Item Obtainment Jingle |
| 9 | Chozo Seal Room ~ Ancient Chozo Ruins (Ver. 1) |
| 10 | Aeion Ability Obtainment Jingle |
| 11 | Surface, Sector 2 ~ Surface of SR388 |
| 12 | Expansion Obtainment Jingle |
| 13 | Before the Boss Battle |
| 14 | VS. Alpha Metroid |
| 15 | Boss Defeated |
| 16 | Puzzle Solved Jingle |
| 17 | Chozo Seal Unlocked Jingle |
| 18 | Unlocked Chozo Seal Room |
| 19 | Area 1 ~ Caverns (Ver. 2) |
| 20 | Extreme Heat ~ Norfair - Ancient Ruins Area |
| 21 | Area 2, Sector 1 |
| 22 | VS. Evolved Alpha Metroid |
| 23 | Area 2, Sector 2 |
| 24 | Area 2, Sector 3 |
| 25 | VS. Gamma Metroid |
| 26 | VS. Arachnus |
| 27 | Area 3, Sector 1 ~ Caverns (Ver. 2) |
| 28 | Area 3, Sector 2 ~ Ancient 39. Chozo Ruins (Ver. 2) |
| 29 | Area 3, Sector 3 ~ Caverns (Ver. 3) |
| 30 | Area 4 |
| 31 | Damaged Item Room |
| 32 | Diggernaut Chase |
| 33 | VS. Zeta Metroid |
| 34 | Area 5, Sector 1 |
| 35 | Area 5, Sector 2 ~ Brinstar (Red Soil Wetland Area) |
| 36 | Area 5, Sector 3 ~ Ancient Chozo Ruins (Ver. 3) |
| 37 | Area 6, Sector 1 |
| 38 | Area 6, Sector 2 |
| 39 | Damaged Chozo Seal Room |
| 40 | VS. Omega Metroid |
| 41 | VS. Diggernaut |
| 42 | Area 7 |
| 43 | Area 8, Sector 1 |
| 44 | Area 8, Sector 2 ~ Metroid Nest |
| 45 | Area 8, Sector 3 |
| 46 | VS. Queen Metroid |
| 47 | Area 8, Sector 4 ~ Metroid Hatchling Theme |
| 48 | Surface, Sector 3 ~ Planet Zebes - Crateria Arrival |
| 49 | VS. Proteus Ridley, Phase 1 |
| 50 | VS. Proteus Ridley, Phase 2 |
| 51 | VS. Proteus Ridley, Phase 3 |
| 52 | Ending |
| 53 | Staff Credits |
| 54 | End Results |
| 55 | Chozo Memories ~ Chozo Memory #11 |
