| 1 | A New Venture (Title Theme) |
| 2 | Training |
| 3 | Plant Kingdom (Act1&2 Mix) |
| 4 | Machine Labyrinth (Act1&2 Mix) |
| 5 | Coral Cave (Act1&2 Mix) |
| 6 | Haunted Ship (Act1&2 Mix) |
| 7 | Blizzard Peaks (Act1&2 Mix) |
| 8 | Sky Babylon (Act1&2 Mix) |
| 9 | Pirates Island (Act1&2 Mix) |
| 10 | Jingle - Act Clear |
| 11 | Windmill Village Mode 1 |
| 12 | Jingle - Dock Constructed |
| 13 | Cutscene - Sailing |
| 14 | Waterbike |
| 15 | Windmill Village Mode 2 |
| 16 | Sailboat |
| 17 | Windmill Village Mode 3 |
| 18 | Sea Map |
| 19 | Hovercraft |
| 20 | Windmill Village Mode 4 |
| 21 | Submarine |
| 22 | Windmill Village Mode 5 |
| 23 | Emerald |
| 24 | Hidden Island |
| 25 | Invincible Medley |
| 26 | Cutscene - Opening |
| 27 | Cutscene - Normal |
| 28 | Cutscene - Tense |
| 29 | Cutscene - Nervous |
| 30 | Cutscene - Island Appears |
| 31 | Cutscene - Blaze Appears |
| 32 | Cutscene - Waiting for Boss |
| 33 | Boss |
| 34 | Jingle - Boss Clear |
| 35 | Puzzle |
| 36 | Cutscene - Pirates |
| 37 | Boss - Whisker & Johnny |
| 38 | Cutscene - Attack |
| 39 | Cutscene - Big Swell |
| 40 | Boss - Big Swell |
| 41 | Jingle - Big Swell Clear |
| 42 | Cutscene - Big Swell Clear |
| 43 | Cutscene - Eggman Appears |
| 44 | Cutscene - The Power |
| 45 | Cutscene - Transform |
| 46 | Boss - Deep Core |
| 47 | Boss - Deep Core - Allegro |
| 48 | Jingle - Deep Core Clear |
| 49 | Cutscene - Formation Reversion |
| 50 | Cutscene - Deep Core Clear |
| 51 | End Credits |
| 52 | Epilogue |
